2024 Htftarget database

Htftarget database

Author: vnhk

August undefined, 2024

WebFeb 22, 2024 · Since FLI1 regulates the expression of its target genes by binding to their promoter regions, we explored whether it directly modulated the expression of TIE1, which has been reported to promote XPC-dependent nucleotide excision repair (NER) and chemotherapy resistance . hTFtarget ChIP-seq database also indicated that FLI1 might ... WebApr 10, 2024 · In addition to exploring and analyzing the genomic and epigenetic regulation mechanism of COPZ1 gene expression, we also analyzed the correlation between COPZ1 expression level and its potential regulated transcription factors. One hundred and seventeen potential transcription factors of COPZ1 were downloaded from the hTFtarget …

The transcription factor USF1 promotes glioma cell invasion and ...

WebWelcome to our hTFtarget. Transcription factors (TFs) as key regulators could modulate the expression of target genes by binding to specific DNA sequences of their promoter (s) or … WebFeb 3, 2024 · More recently, the gene transcription regulation database (GTRD), an integrated database, can also be used for TF-targeted gene analysis in knockout, knockdown, ... TP53, and ZEB1 was obtained from an open resource hTFtarget with default setting and TFoTF with the 75th percentile value of the corresponding score as the cut … online ttd darshan

Target Finder of Transcription Factor (TFoTF): a novel tool to …

WebNov 16, 2024 · In this study, we constructed a database named hTFtarget, which integrated huge human TF target resources (7,190 ChIP-Seq samples of 659 TFs and high … WebJan 19, 2024 · The bioinformatics databases (hTFtarget, starBase and TargetScan) were used to predict the upstream and downstream regulatory molecules of E2F7. Then the binding relationships between E2F7 and regulatory molecules were verified by ChIP and dual-luciferase reporter assay. qRT-PCR and western blot were used to detect the … WebApr 1, 2024 · The HOCOMOCO , JASPAR , TRANSFAC v2024 , and TFBSbank databases focus on the collection and discovery of the motif profiles for TFBSs, while TRRUST elucidates TF–target interactions using text mining . hTFtarget is the only currently available database integrating various resources to provide an almost one-stop solution in … online tsrtc

The transcription factor USF1 promotes glioma cell invasion and ...

AnimalTFDB 4.0: a comprehensive animal transcription factor database ...

WebFeb 3, 2024 · The binding TFs of the known marker genes and the chromosome loci of these motifs were found from hTFtarget database. d Visualization of cells by VscAI. Known marker genes (left panel) and motifs related with these marker genes (right panel) were projected onto the same low-dimensional space. The same motifs such as SMAD3 and … online ttp hmrcWebIn this study, we developed a database named hTFtarget, which curated a comprehensive repertoire of TF-target relationships for human and offered an almost one-stop solution … is buckeye down

"WebOct 30, 2024 · Some TF-related databases also provide useful data for TcoFs, such as AnimalTFDB , and ApicoTFdb , which offer basic annotation information for TcoFs. … " - Htftarget database

Htftarget database

Frontiers S100A12 as Biomarker of Disease Severity and …

WebApr 1, 2024 · b Prediction of transcription factor binding site of hTFTARGET database. c Prediction of transcription factor binding site of HumanTFDB database. Rights and permissions. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and … WebSep 12, 2024 · Finally, a transcription factor-key gene network was constructed based on ChEA3 platform and hTFtarget database, and a miRNA-key gene network was con-structed using starBase and the multimiR R package. Results: The most positively or negatively correlated modules of the two datasets were identified, and genes related to …

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WebW3Schools offers free online tutorials, references and exercises in all the major languages of the web. Covering popular subjects like HTML, CSS, JavaScript, Python, SQL, Java, … WebIn this study, we constructed a database named hTFtarget, which integrated huge human TF target resources (7190 ChIP-seq samples of 659 TFs and high-confidence binding …

WebSep 12, 2024 · Finally, a transcription factor-key gene network was constructed based on ChEA3 platform and hTFtarget database, and a miRNA-key gene network was constructed using starBase and the multimiR R package. WebMay 26, 2024 · To date, several TF databases have been developed to explore this information. For example, TF-target gene regulation databases like TRRUST ( Han et al. …

WebOct 21, 2024 · Among all the TF databases, Animal Transcription Factor Database (AnimalTFDB) is the most comprehensive animal TF database including classification and annotation of genome-wide TFs and transcription cofactors (TcoFs). We constructed the AnimalTFDB in 2011 , and updated it in 2015 and 2024 with more species, annotations … WebApr 1, 2024 · The HOCOMOCO , JASPAR , TRANSFAC v2024 , and TFBSbank databases focus on the collection and discovery of the motif profiles for TFBSs, while TRRUST …

WebApr 1, 2024 · The HOCOMOCO [22], JASPAR [23], TRANSFAC v2024 [24], and TFBSbank [31] databases focus on the collection and discovery of the motif profiles for TFBSs, …

WebA study has developed a database named hTFtarget by creating a comprehensive TF-target relationship library for humans, which can serve as a useful resource for … online tshirt designer free downloadWebSep 24, 2024 · The potential transcriptional factors for PD-1 and CTLA-4 were predicted from the hTFtarget online tool [22]. The JASPAR online tool [23] was used to identify the … is buckeye a popular flooring materialWebA study has developed a database named hTFtarget by creating a comprehensive TF-target relationship library for humans, which can serve as a useful resource for researchers in TF regulation and ... is buckeye insurance medicaid or medicareWebJan 4, 2024 · TCGA, hTFtarget, and MSigDB databases were employed to identify NF- κ B-related metabolic genes (NFMGs). Based on NFMGs, we used consensus clustering … is buckethead deadWebFeb 22, 2024 · Combined with the hTFtarget and Knock-TF databases, TFAP4 was found to potentially transcriptionally activate EGFR, KIAA0652, HSPA5, RAB7A, HIF1A, and LAMP1 . The RNAInter predicted that ELAVL1 had the highest number of potential hub genes . DGIdb showed that SORAFENIB could act on EGFR, HIF1A, and MAPK1 . is buckeye internet downWebSep 6, 2024 · In this study, we constructed a database named hTFtarget, which integrated huge human TF target resources (7190 ChIP-seq samples of 659 TFs and high … is buckeye arizona a good place to liveWebAug 28, 2024 · The hTFtarget database was used to predict the upstream transcription factors of HAS2-AS1 and the JASPAR website was used to predict the binding sites of … online tts free